HL_8UBA_002

3D structure

PDB id

8UBA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8UBA|1|I|U|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UBA_002 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3075

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8UBA|1|I|C|72
8UBA|1|I|U|73
8UBA|1|I|U|74
8UBA|1|I|C|75
8UBA|1|I|G|76
8UBA|1|I|G|77

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase