HL_8UBE_002

3D structure

PDB id

8UBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1a

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8UBE|1|I|U|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UBE_002 not in the Motif Atlas

Geometric match to HL_8VTW_023

Geometric discrepancy: 0.2143

The information below is about HL_8VTW_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8UBE|1|I|C|72
8UBE|1|I|U|73
8UBE|1|I|U|74
8UBE|1|I|C|75
8UBE|1|I|G|76
8UBE|1|I|G|77

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase