HL_8UD6_030

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

8UD6|1|1A|U|1175, 8UD6|1|1A|G|1176, 8UD6|1|1A|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_030 not in the Motif Atlas

Homologous match to HL_7RQB_031

Geometric discrepancy: 0.3617

The information below is about HL_7RQB_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94651.3

Basepair signature

cWW-tSS

Number of instances in this motif group

6

Unit IDs

8UD6|1|1A|G|1171
8UD6|1|1A|G|1173
8UD6|1|1A|A|1174
8UD6|1|1A|U|1175
8UD6|1|1A|G|1176
8UD6|1|1A|A|1177
8UD6|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains