HL_8UD6_037

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8UD6|1|1A|C|1493, 8UD6|1|1A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_037 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.0519

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

8UD6|1|1A|G|1492
8UD6|1|1A|C|1493
8UD6|1|1A|A|1494
8UD6|1|1A|A|1495
8UD6|1|1A|A|1496
8UD6|1|1A|U|1497
8UD6|1|1A|C|1498

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2