HL_8UD6_042

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

8UD6|1|1A|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.1922

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

8UD6|1|1A|U|1720
8UD6|1|1A|G|1721
8UD6|1|1A|A|1722
8UD6|1|1A|U|1739
8UD6|1|1A|G|1740
8UD6|1|1A|A|1741
8UD6|1|1A|G|1742

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains