HL_8UD6_060

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

8UD6|1|1A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0485

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8UD6|1|1A|U|2528
8UD6|1|1A|G|2529
8UD6|1|1A|A|2530
8UD6|1|1A|A|2531
8UD6|1|1A|G|2532
8UD6|1|1A|A|2533
8UD6|1|1A|A|2534
8UD6|1|1A|G|2535

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6