HL_8UD6_071
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UD6_071 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0475
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UD6|1|1a|U|12
8UD6|1|1a|U|13
8UD6|1|1a|U|14
8UD6|1|1a|G|15
8UD6|1|1a|A|16
8UD6|1|1a|U|17
8UD6|1|1a|C|18
8UD6|1|1a|C|19
8UD6|1|1a|U|20
8UD6|1|1a|G|21
8UD6|1|1a|G|22
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1e
- 30S ribosomal protein S5
- Chain 1v
- MF-mRNA
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