3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UUGGGAAG
Length
8 nucleotides
Bulged bases
8UD6|1|2A|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_121 not in the Motif Atlas
Homologous match to HL_7RQB_010
Geometric discrepancy: 0.0628
The information below is about HL_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

8UD6|1|2A|U|305
8UD6|1|2A|U|306
8UD6|1|2A|G|307
8UD6|1|2A|G|308
8UD6|1|2A|G|309
8UD6|1|2A|A|310
8UD6|1|2A|A|311
8UD6|1|2A|G|312

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2Y
50S ribosomal protein L24

Coloring options:


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