3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGUUGAG
Length
7 nucleotides
Bulged bases
8UD6|1|2A|G|614|||B
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_130 not in the Motif Atlas
Homologous match to HL_7RQB_019
Geometric discrepancy: 0.0561
The information below is about HL_7RQB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32369.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
6

Unit IDs

8UD6|1|2A|C|612
8UD6|1|2A|G|613
8UD6|1|2A|U|614
8UD6|1|2A|U|614|||A
8UD6|1|2A|G|614|||B
8UD6|1|2A|A|614|||C
8UD6|1|2A|G|615

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4

Coloring options:


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