HL_8UD6_225
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 8UD6|1|1B|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UD6_225 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.048
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8UD6|1|1B|U|34
8UD6|1|1B|U|35
8UD6|1|1B|C|36
8UD6|1|1B|C|37
8UD6|1|1B|C|38
8UD6|1|1B|A|39
8UD6|1|1B|U|40
8UD6|1|1B|U|41
8UD6|1|1B|C|42
8UD6|1|1B|C|43
8UD6|1|1B|G|44
8UD6|1|1B|A|45
8UD6|1|1B|A|46
8UD6|1|1B|C|47
8UD6|1|1B|A|48
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L31
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
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