HL_8UD7_026

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

8UD7|1|1A|C|888, 8UD7|1|1A|C|889

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD7_026 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3888

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8UD7|1|1A|C|884
8UD7|1|1A|C|885
8UD7|1|1A|C|886
8UD7|1|1A|A|887
8UD7|1|1A|C|888
8UD7|1|1A|C|889
8UD7|1|1A|A|890
8UD7|1|1A|G|892

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1w

Transfer RNA; tRNA