HL_8UD7_235

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD7_235 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0773

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8UD7|1|1A|G|2304
8UD7|1|1A|A|2305
8UD7|1|1A|C|2306
8UD7|1|1A|G|2307
8UD7|1|1A|G|2308
8UD7|1|1A|A|2309
8UD7|1|1A|A|2310
8UD7|1|1A|A|2311
8UD7|1|1A|U|2312

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5