HL_8UIK_009

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

8UIK|1|L5|G|315, 8UIK|1|L5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_009 not in the Motif Atlas

Homologous match to HL_8CRE_009

Geometric discrepancy: 0.1183

The information below is about HL_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UIK|1|L5|G|314
8UIK|1|L5|G|315
8UIK|1|L5|U|316
8UIK|1|L5|A|317
8UIK|1|L5|A|318
8UIK|1|L5|A|319
8UIK|1|L5|C|320
8UIK|1|L5|U|321
8UIK|1|L5|C|322
8UIK|1|L5|C|323

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a