RNA 3D Hub //

Motif HL_77600.2 Version HL_77600.2 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-7
1 HL_9DFE_0029DFE0.63902Pseudoknot geometry (H)1A LSU rRNAC87U90A92G93C94G94|||AG95cWW
2 HL_4WF9_0024WF90.61222Pseudoknot geometryX LSU rRNAU87A90A91G92U93A94A95cWW
3 HL_7JRR_0017JRR0.49062ARNA (50-MER)G12C15C16A17U18C19C20cWW
4 HL_7JRR_0027JRR0.49682ARNA (50-MER)G39U42G43G44U45U46C47cWW
5 HL_5X6B_0045X6B0.54162P tRNAA30G33C34A35G36A37U38ncWW
6 HL_4QLM_0024QLM0.28233Pseudoknot geometryA cyclic di-AMP riboswitchU72C76C77U78U79C80G81cWW
7 HL_8P9A_1218P9A0.09553Pseudoknot geometry (H)AR LSU rRNAG303A307A308U309U310C311C312cWW
8 HL_8CRE_0098CRE0.00003Pseudoknot geometry (H)1 LSU rRNAG303A307A308U309U310C311C312cWW
9 HL_4ENC_0014ENC0.22883Pseudoknot geometryAFluoride riboswitchG5A9G10G11C12C13C14cWW
10 HL_7KGA_0037KGA0.77563Pseudoknot geometryBFlavivirus DB elementU22G26C27C28U29A30G31cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUAAAUUCC2
CGGUAGCGG1
UGUAAGUAA1
GAACCAUCC1
GGAUGGUUC1
ACUGCAGAU1
UACUCCUUCG1
GAUGAGGCCC1
UCAAGCCUAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAAAUUC2
GGUAGCG1
GUAAGUA1
AACCAUC1
GAUGGUU1
CUGCAGA1
ACUCCUUC1
AUGAGGCC1
CAAGCCUA1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry (4)
  • (3)
  • Pseudoknot geometry (H) (3)
    • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.10 | Avg 0.49 | Max 0.87
    Help

    Coloring options:

    HL_9DFE_002:HL_9DFE_002 = 0HL_9DFE_002:HL_4WF9_002 = 0.4474HL_9DFE_002:HL_7JRR_001 = 0.5717HL_9DFE_002:HL_7JRR_002 = 0.5451HL_9DFE_002:HL_5X6B_004 = 0.6712HL_9DFE_002:HL_4QLM_002 = 0.6065HL_9DFE_002:HL_8P9A_121 = 0.6568HL_9DFE_002:HL_8CRE_009 = 0.639HL_9DFE_002:HL_4ENC_001 = 0.6705HL_9DFE_002:HL_7KGA_003 = 0.8698HL_4WF9_002:HL_9DFE_002 = 0.4474HL_4WF9_002:HL_4WF9_002 = 0HL_4WF9_002:HL_7JRR_001 = 0.4912HL_4WF9_002:HL_7JRR_002 = 0.4729HL_4WF9_002:HL_5X6B_004 = 0.5885HL_4WF9_002:HL_4QLM_002 = 0.5576HL_4WF9_002:HL_8P9A_121 = 0.6251HL_4WF9_002:HL_8CRE_009 = 0.6122HL_4WF9_002:HL_4ENC_001 = 0.6273HL_4WF9_002:HL_7KGA_003 = 0.818HL_7JRR_001:HL_9DFE_002 = 0.5717HL_7JRR_001:HL_4WF9_002 = 0.4912HL_7JRR_001:HL_7JRR_001 = 0HL_7JRR_001:HL_7JRR_002 = 0.1386HL_7JRR_001:HL_5X6B_004 = 0.3926HL_7JRR_001:HL_4QLM_002 = 0.5462HL_7JRR_001:HL_8P9A_121 = 0.4927HL_7JRR_001:HL_8CRE_009 = 0.4906HL_7JRR_001:HL_4ENC_001 = 0.5717HL_7JRR_001:HL_7KGA_003 = 0.6529HL_7JRR_002:HL_9DFE_002 = 0.5451HL_7JRR_002:HL_4WF9_002 = 0.4729HL_7JRR_002:HL_7JRR_001 = 0.1386HL_7JRR_002:HL_7JRR_002 = 0HL_7JRR_002:HL_5X6B_004 = 0.3513HL_7JRR_002:HL_4QLM_002 = 0.5353HL_7JRR_002:HL_8P9A_121 = 0.4934HL_7JRR_002:HL_8CRE_009 = 0.4968HL_7JRR_002:HL_4ENC_001 = 0.5753HL_7JRR_002:HL_7KGA_003 = 0.6176HL_5X6B_004:HL_9DFE_002 = 0.6712HL_5X6B_004:HL_4WF9_002 = 0.5885HL_5X6B_004:HL_7JRR_001 = 0.3926HL_5X6B_004:HL_7JRR_002 = 0.3513HL_5X6B_004:HL_5X6B_004 = 0HL_5X6B_004:HL_4QLM_002 = 0.5546HL_5X6B_004:HL_8P9A_121 = 0.5259HL_5X6B_004:HL_8CRE_009 = 0.5416HL_5X6B_004:HL_4ENC_001 = 0.6842HL_5X6B_004:HL_7KGA_003 = 0.7805HL_4QLM_002:HL_9DFE_002 = 0.6065HL_4QLM_002:HL_4WF9_002 = 0.5576HL_4QLM_002:HL_7JRR_001 = 0.5462HL_4QLM_002:HL_7JRR_002 = 0.5353HL_4QLM_002:HL_5X6B_004 = 0.5546HL_4QLM_002:HL_4QLM_002 = 0HL_4QLM_002:HL_8P9A_121 = 0.3074HL_4QLM_002:HL_8CRE_009 = 0.2823HL_4QLM_002:HL_4ENC_001 = 0.3613HL_4QLM_002:HL_7KGA_003 = 0.68HL_8P9A_121:HL_9DFE_002 = 0.6568HL_8P9A_121:HL_4WF9_002 = 0.6251HL_8P9A_121:HL_7JRR_001 = 0.4927HL_8P9A_121:HL_7JRR_002 = 0.4934HL_8P9A_121:HL_5X6B_004 = 0.5259HL_8P9A_121:HL_4QLM_002 = 0.3074HL_8P9A_121:HL_8P9A_121 = 0HL_8P9A_121:HL_8CRE_009 = 0.0955HL_8P9A_121:HL_4ENC_001 = 0.2882HL_8P9A_121:HL_7KGA_003 = 0.7961HL_8CRE_009:HL_9DFE_002 = 0.639HL_8CRE_009:HL_4WF9_002 = 0.6122HL_8CRE_009:HL_7JRR_001 = 0.4906HL_8CRE_009:HL_7JRR_002 = 0.4968HL_8CRE_009:HL_5X6B_004 = 0.5416HL_8CRE_009:HL_4QLM_002 = 0.2823HL_8CRE_009:HL_8P9A_121 = 0.0955HL_8CRE_009:HL_8CRE_009 = 0HL_8CRE_009:HL_4ENC_001 = 0.2288HL_8CRE_009:HL_7KGA_003 = 0.7756HL_4ENC_001:HL_9DFE_002 = 0.6705HL_4ENC_001:HL_4WF9_002 = 0.6273HL_4ENC_001:HL_7JRR_001 = 0.5717HL_4ENC_001:HL_7JRR_002 = 0.5753HL_4ENC_001:HL_5X6B_004 = 0.6842HL_4ENC_001:HL_4QLM_002 = 0.3613HL_4ENC_001:HL_8P9A_121 = 0.2882HL_4ENC_001:HL_8CRE_009 = 0.2288HL_4ENC_001:HL_4ENC_001 = 0HL_4ENC_001:HL_7KGA_003 = 0.5654HL_7KGA_003:HL_9DFE_002 = 0.8698HL_7KGA_003:HL_4WF9_002 = 0.818HL_7KGA_003:HL_7JRR_001 = 0.6529HL_7KGA_003:HL_7JRR_002 = 0.6176HL_7KGA_003:HL_5X6B_004 = 0.7805HL_7KGA_003:HL_4QLM_002 = 0.68HL_7KGA_003:HL_8P9A_121 = 0.7961HL_7KGA_003:HL_8CRE_009 = 0.7756HL_7KGA_003:HL_4ENC_001 = 0.5654HL_7KGA_003:HL_7KGA_003 = 0HL_9DFE_002HL_4WF9_002HL_7JRR_001HL_7JRR_002HL_5X6B_004HL_4QLM_002HL_8P9A_121HL_8CRE_009HL_4ENC_001HL_7KGA_003Discrepancy0.000.200.400.600.80
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