HL_8UIK_030

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8UIK|1|L5|U|1980, 8UIK|1|L5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_030 not in the Motif Atlas

Homologous match to HL_8CRE_026

Geometric discrepancy: 0.3364

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UIK|1|L5|C|1978
8UIK|1|L5|A|1979
8UIK|1|L5|U|1980
8UIK|1|L5|G|1981
8UIK|1|L5|G|1982
8UIK|1|L5|A|1983
8UIK|1|L5|A|1984
8UIK|1|L5|G|1985
8UIK|1|L5|U|1986
8UIK|1|L5|C|1987
8UIK|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lt

60S ribosomal protein L12