HL_8UIK_045
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8UIK|1|L5|C|2794, 8UIK|1|L5|G|2796, 8UIK|1|L5|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UIK_045 not in the Motif Atlas
- Homologous match to HL_8P9A_152
- Geometric discrepancy: 0.0814
- The information below is about HL_8P9A_152
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8UIK|1|L5|C|2792
8UIK|1|L5|G|2793
8UIK|1|L5|C|2794
8UIK|1|L5|A|2795
8UIK|1|L5|G|2796
8UIK|1|L5|C|2797
8UIK|1|L5|A|2798
8UIK|1|L5|G|2799
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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