HL_8UIK_063

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_063 not in the Motif Atlas

Homologous match to HL_8CRE_055

Geometric discrepancy: 0.1653

The information below is about HL_8CRE_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8UIK|1|L5|G|4250
8UIK|1|L5|A|4251
8UIK|1|L5|C|4252
8UIK|1|L5|A|4253
8UIK|1|L5|G|4254
8UIK|1|L5|A|4255
8UIK|1|L5|A|4256
8UIK|1|L5|A|4257
8UIK|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11