3D structure

PDB id
8UIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N
Experimental method
X-RAY DIFFRACTION
Resolution
2.77 Å

Loop

Sequence
GAAACAC
Length
7 nucleotides
Bulged bases
8UIW|1|N|A|30, 8UIW|1|N|A|32
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Fab BL3-6 binding hairpin with tSW
Broad Annotation
No text annotation
Motif group
HL_64036.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
20

Unit IDs

8UIW|1|N|G|29
8UIW|1|N|A|30
8UIW|1|N|A|31
8UIW|1|N|A|32
8UIW|1|N|C|33
8UIW|1|N|A|34
8UIW|1|N|C|35

Current chains

Chain N
yjdF RNA (R. gauvreauii)

Nearby chains

Chain H
Fab BL3-6 S97N heavy chain
Chain L
Fab BL3-6 S97N light chain

Coloring options:

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