HL_8UIW_008

3D structure

PDB id

8UIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N

Experimental method

X-RAY DIFFRACTION

Resolution

2.77 Å

Loop

Sequence

UCCUUA

Length

6 nucleotides

Bulged bases

8UIW|1|R|C|107, 8UIW|1|R|U|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIW_008 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.1454

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

8UIW|1|R|U|105
8UIW|1|R|C|106
8UIW|1|R|C|107
8UIW|1|R|U|108
8UIW|1|R|U|109
8UIW|1|R|A|110

Current chains

Chain R

yjdF RNA (R. gauvreauii)

Nearby chains