HL_8UIY_011

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_011 not in the Motif Atlas

Homologous match to HL_8CRE_011

Geometric discrepancy: 0.1394

The information below is about HL_8CRE_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UIY|1|L5|U|393
8UIY|1|L5|G|394
8UIY|1|L5|A|395
8UIY|1|L5|A|396
8UIY|1|L5|G|397
8UIY|1|L5|A|398

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17