HL_8UIY_028

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8UIY|1|L5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_028 not in the Motif Atlas

Homologous match to HL_8CRE_026

Geometric discrepancy: 0.3544

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UIY|1|L5|C|1978
8UIY|1|L5|A|1979
8UIY|1|L5|U|1980
8UIY|1|L5|G|1981
8UIY|1|L5|G|1982
8UIY|1|L5|A|1983
8UIY|1|L5|A|1984
8UIY|1|L5|G|1985
8UIY|1|L5|U|1986
8UIY|1|L5|C|1987
8UIY|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11