HL_8UIY_042

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8UIY|1|L5|C|2794, 8UIY|1|L5|G|2796, 8UIY|1|L5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_042 not in the Motif Atlas

Homologous match to HL_8P9A_152

Geometric discrepancy: 0.0855

The information below is about HL_8P9A_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8UIY|1|L5|C|2792
8UIY|1|L5|G|2793
8UIY|1|L5|C|2794
8UIY|1|L5|A|2795
8UIY|1|L5|G|2796
8UIY|1|L5|C|2797
8UIY|1|L5|A|2798
8UIY|1|L5|G|2799

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39