HL_8UIY_099

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_099 not in the Motif Atlas

Homologous match to HL_8CRE_210

Geometric discrepancy: 0.1104

The information below is about HL_8CRE_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8UIY|1|S2|A|957
8UIY|1|S2|G|958
8UIY|1|S2|G|959
8UIY|1|S2|U|960
8UIY|1|S2|G|961
8UIY|1|S2|A|962
8UIY|1|S2|A|963
8UIY|1|S2|A|964
8UIY|1|S2|U|965
8UIY|1|S2|U|966

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SO

Small ribosomal subunit protein uS11