HL_8UIY_116
3D structure
- PDB id
- 8UIY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- CAGCUGUAG
- Length
- 9 nucleotides
- Bulged bases
- 8UIY|1|Zt|C|16, 8UIY|1|Zt|U|18, 8UIY|1|Zt|G|19, 8UIY|1|Zt|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UIY_116 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.2695
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_65478.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 4
Unit IDs
8UIY|1|Zt|C|13
8UIY|1|Zt|A|14
8UIY|1|Zt|G|15
8UIY|1|Zt|C|16
8UIY|1|Zt|U|18
8UIY|1|Zt|G|19
8UIY|1|Zt|U|20
8UIY|1|Zt|A|21
8UIY|1|Zt|G|22
Current chains
- Chain Zt
- Z site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: