HL_8UIZ_021

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

8UIZ|1|L5|C|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIZ_021 not in the Motif Atlas

Geometric match to HL_8XZL_001

Geometric discrepancy: 0.2709

The information below is about HL_8XZL_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12111.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8UIZ|1|L5|C|1480
8UIZ|1|L5|C|1481
8UIZ|1|L5|G|1482
8UIZ|1|L5|C|1483
8UIZ|1|L5|G|1484

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Li

60S ribosomal protein L36