Motif HL_12111.1 Version HL_12111.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_031 | 8GLP | 0.1935 | 0 | L5 | LSU rRNA | C | 2257 | C | 2258 | G | 2259 | C | 2260 | G | 2261 | cWW | |
| 2 | HL_8GLP_021 | 8GLP | 0.0000 | 0 | L5 | LSU rRNA | C | 1480 | C | 1481 | G | 1482 | C | 1483 | G | 1484 | cWW | |
| 3 | HL_8XZL_001 | 8XZL | 0.1895 | 0 | Mini UNCG | A | THF-II riboswitch (folE RNA) | C | 28 | U | 29 | U | 30 | C | 31 | G | 32 | cWW |
| 4 | HL_2OZB_002 | 2OZB | 0.7254 | 2 | F | RNA comprising the 5' Stem-Loop RNA of U4snRNA | G | 35 | U | 37 | U | 38 | A | 39 | C | 41 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGCG | 2 |
| CUUCG | 1 |
| GUUUAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGC | 2 |
| UUC | 1 |
| UUUAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Mini UNCG (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.19 | Avg 0.36 | Max 0.78
Coloring options: