3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
8UIZ|1|L5|G|2421, 8UIZ|1|L5|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UIZ_034 not in the Motif Atlas
Homologous match to HL_8P9A_144
Geometric discrepancy: 0.1609
The information below is about HL_8P9A_144
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_49081.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
17

Unit IDs

8UIZ|1|L5|A|2420
8UIZ|1|L5|G|2421
8UIZ|1|L5|C|2422
8UIZ|1|L5|A|2423
8UIZ|1|L5|G|2424
8UIZ|1|L5|U|2425
8UIZ|1|L5|U|2426

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19

Coloring options:


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