HL_8UIZ_062

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

8UIZ|1|L5|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIZ_062 not in the Motif Atlas

Geometric match to HL_7JRT_001

Geometric discrepancy: 0.3409

The information below is about HL_7JRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67407.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UIZ|1|L5|U|4352
8UIZ|1|L5|U|4353
8UIZ|1|L5|U|4354
8UIZ|1|L5|G|4355
8UIZ|1|L5|G|4356
8UIZ|1|L5|G|4357
8UIZ|1|L5|U|4358
8UIZ|1|L5|U|4359
8UIZ|1|L5|U|4360
8UIZ|1|L5|U|4361
8UIZ|1|L5|A|4362

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a