3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
8UIZ|1|S2|C|450, 8UIZ|1|S2|G|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UIZ_090 not in the Motif Atlas
Homologous match to HL_8CRE_200
Geometric discrepancy: 0.077
The information below is about HL_8CRE_200
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86432.1
Basepair signature
cWW-tWH-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

8UIZ|1|S2|C|441
8UIZ|1|S2|C|442
8UIZ|1|S2|U|443
8UIZ|1|S2|G|444
8UIZ|1|S2|A|445
8UIZ|1|S2|G|446
8UIZ|1|S2|A|447
8UIZ|1|S2|A|448
8UIZ|1|S2|A|449
8UIZ|1|S2|C|450
8UIZ|1|S2|G|451
8UIZ|1|S2|G|452

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SG
40S ribosomal protein S6
Chain SI
40S ribosomal protein S8
Chain SY
40S ribosomal protein S24

Coloring options:


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