3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UIZ_100 not in the Motif Atlas
Homologous match to HL_8CRE_210
Geometric discrepancy: 0.0987
The information below is about HL_8CRE_210
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38491.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8UIZ|1|S2|A|957
8UIZ|1|S2|G|958
8UIZ|1|S2|G|959
8UIZ|1|S2|U|960
8UIZ|1|S2|G|961
8UIZ|1|S2|A|962
8UIZ|1|S2|A|963
8UIZ|1|S2|A|964
8UIZ|1|S2|U|965
8UIZ|1|S2|U|966

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain Et
Transfer RNA; tRNA
Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SF
40S ribosomal protein S5
Chain SO
Small ribosomal subunit protein uS11

Coloring options:


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