3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UGCAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UIZ_105 not in the Motif Atlas
Homologous match to HL_8CRE_215
Geometric discrepancy: 0.0788
The information below is about HL_8CRE_215
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8UIZ|1|S2|U|1178
8UIZ|1|S2|G|1179
8UIZ|1|S2|C|1180
8UIZ|1|S2|A|1181
8UIZ|1|S2|A|1182
8UIZ|1|S2|A|1183

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41
Chain Lp
60S ribosomal protein L37a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.1035 s