HL_8UJ9_022

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8UJ9|1|L5|A|1630, 8UJ9|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_022 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.1001

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8UJ9|1|L5|G|1627
8UJ9|1|L5|C|1628
8UJ9|1|L5|G|1629
8UJ9|1|L5|A|1630
8UJ9|1|L5|A|1631
8UJ9|1|L5|A|1632
8UJ9|1|L5|G|1633
8UJ9|1|L5|A|1634
8UJ9|1|L5|C|1635

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37