HL_8UJ9_026

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8UJ9|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_026 not in the Motif Atlas

Homologous match to HL_8CRE_024

Geometric discrepancy: 0.0839

The information below is about HL_8CRE_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UJ9|1|L5|G|1864
8UJ9|1|L5|G|1865
8UJ9|1|L5|U|1866
8UJ9|1|L5|A|1867
8UJ9|1|L5|A|1868
8UJ9|1|L5|G|1869
8UJ9|1|L5|C|1870

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like