HL_8UJ9_037

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_037 not in the Motif Atlas

Homologous match to HL_8CRE_035

Geometric discrepancy: 0.0849

The information below is about HL_8CRE_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UJ9|1|L5|G|2578
8UJ9|1|L5|G|2579
8UJ9|1|L5|U|2580
8UJ9|1|L5|A|2581
8UJ9|1|L5|A|2582
8UJ9|1|L5|C|2583

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34