HL_8UJ9_056

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8UJ9|1|L5|A|4214, 8UJ9|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_056 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1105

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8UJ9|1|L5|U|4210
8UJ9|1|L5|C|4211
8UJ9|1|L5|A|4212
8UJ9|1|L5|A|4213
8UJ9|1|L5|A|4214
8UJ9|1|L5|C|4215
8UJ9|1|L5|G|4216
8UJ9|1|L5|G|4217
8UJ9|1|L5|U|4218
8UJ9|1|L5|A|4219
8UJ9|1|L5|A|4220
8UJ9|1|L5|C|4221
8UJ9|1|L5|G|4222

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29