HL_8UJ9_081
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJ9_081 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.1723
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8UJ9|1|Pt|G|53
8UJ9|1|Pt|U|54
8UJ9|1|Pt|U|55
8UJ9|1|Pt|C|56
8UJ9|1|Pt|G|57
8UJ9|1|Pt|A|58
8UJ9|1|Pt|A|59
8UJ9|1|Pt|A|60
8UJ9|1|Pt|C|61
Current chains
- Chain Pt
- P site tRNA [Homo sapiens]
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: