HL_8UJ9_108

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8UJ9|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_108 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1518

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8UJ9|1|S2|G|1366
8UJ9|1|S2|U|1367
8UJ9|1|S2|U|1368
8UJ9|1|S2|A|1369
8UJ9|1|S2|A|1370
8UJ9|1|S2|U|1371
8UJ9|1|S2|U|1372
8UJ9|1|S2|C|1373

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SR

Small ribosomal subunit protein eS17