HL_8UJB_029

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8UJB|1|L5|U|1980, 8UJB|1|L5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJB_029 not in the Motif Atlas

Homologous match to HL_8CRE_026

Geometric discrepancy: 0.3033

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UJB|1|L5|C|1978
8UJB|1|L5|A|1979
8UJB|1|L5|U|1980
8UJB|1|L5|G|1981
8UJB|1|L5|G|1982
8UJB|1|L5|A|1983
8UJB|1|L5|A|1984
8UJB|1|L5|G|1985
8UJB|1|L5|U|1986
8UJB|1|L5|C|1987
8UJB|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lt

60S ribosomal protein L12