HL_8UJB_050
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8UJB|1|L5|A|3642, 8UJB|1|L5|A|3643, 8UJB|1|L5|U|3644, 8UJB|1|L5|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UJB_050 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.1278
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8UJB|1|L5|U|3639
8UJB|1|L5|U|3640
8UJB|1|L5|U|3641
8UJB|1|L5|A|3642
8UJB|1|L5|A|3643
8UJB|1|L5|U|3644
8UJB|1|L5|U|3645
8UJB|1|L5|A|3646
8UJB|1|L5|A|3647
8UJB|1|L5|A|3648
8UJB|1|L5|A|3649
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Lj
- 60S ribosomal protein L37
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