HL_8UJC_062

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJC_062 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1127

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UJC|1|L5|C|4417
8UJC|1|L5|G|4418
8UJC|1|L5|U|4419
8UJC|1|L5|U|4420
8UJC|1|L5|C|4421
8UJC|1|L5|A|4422
8UJC|1|L5|U|4423
8UJC|1|L5|A|4424
8UJC|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lm

Large ribosomal subunit protein eL40