HL_8UJD_011

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_011 not in the Motif Atlas

Homologous match to HL_8CRE_011

Geometric discrepancy: 0.1302

The information below is about HL_8CRE_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UJD|1|L5|U|393
8UJD|1|L5|G|394
8UJD|1|L5|A|395
8UJD|1|L5|A|396
8UJD|1|L5|G|397
8UJD|1|L5|A|398

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17