HL_8UJD_022

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8UJD|1|L5|A|1630, 8UJD|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_022 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.082

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8UJD|1|L5|G|1627
8UJD|1|L5|C|1628
8UJD|1|L5|G|1629
8UJD|1|L5|A|1630
8UJD|1|L5|A|1631
8UJD|1|L5|A|1632
8UJD|1|L5|G|1633
8UJD|1|L5|A|1634
8UJD|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37