HL_8UJD_026

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8UJD|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_026 not in the Motif Atlas

Homologous match to HL_8CRE_024

Geometric discrepancy: 0.0781

The information below is about HL_8CRE_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UJD|1|L5|G|1864
8UJD|1|L5|G|1865
8UJD|1|L5|U|1866
8UJD|1|L5|A|1867
8UJD|1|L5|A|1868
8UJD|1|L5|G|1869
8UJD|1|L5|C|1870

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like