HL_8UJD_038

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8UJD|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_038 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1947

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UJD|1|L5|G|2624
8UJD|1|L5|U|2625
8UJD|1|L5|U|2626
8UJD|1|L5|C|2627
8UJD|1|L5|U|2628
8UJD|1|L5|C|2629
8UJD|1|L5|U|2630
8UJD|1|L5|U|2631
8UJD|1|L5|U|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15