HL_8UJD_057

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_057 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.1552

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8UJD|1|L5|G|4250
8UJD|1|L5|A|4251
8UJD|1|L5|C|4252
8UJD|1|L5|A|4253
8UJD|1|L5|G|4254
8UJD|1|L5|A|4255
8UJD|1|L5|A|4256
8UJD|1|L5|A|4257
8UJD|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11