HL_8UJD_070

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8UJD|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJD_070 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.1046

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UJD|1|L5|G|4975
8UJD|1|L5|U|4976
8UJD|1|L5|A|4977
8UJD|1|L5|G|4978
8UJD|1|L5|A|4979
8UJD|1|L5|C|4980
8UJD|1|L5|G|4981
8UJD|1|L5|A|4982
8UJD|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17