HL_8UJJ_001

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GUAGGGUAUC

Length

10 nucleotides

Bulged bases

8UJJ|1|At|G|18, 8UJJ|1|At|G|19, 8UJJ|1|At|U|20|||A

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_001 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.2878

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

8UJJ|1|At|G|12
8UJJ|1|At|U|13
8UJJ|1|At|A|14
8UJJ|1|At|G|15
8UJJ|1|At|G|18
8UJJ|1|At|G|19
8UJJ|1|At|U|20|||A
8UJJ|1|At|A|21
8UJJ|1|At|U|22
8UJJ|1|At|C|23

Current chains

Chain At

A site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA