HL_8UJJ_010

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8UJJ|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_010 not in the Motif Atlas

Homologous match to HL_8P9A_119

Geometric discrepancy: 0.3496

The information below is about HL_8P9A_119

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

8UJJ|1|L5|G|230
8UJJ|1|L5|U|231
8UJJ|1|L5|G|232
8UJJ|1|L5|U|233
8UJJ|1|L5|G|234
8UJJ|1|L5|A|235
8UJJ|1|L5|G|236
8UJJ|1|L5|G|237
8UJJ|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26