HL_8UJJ_025

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8UJJ|1|L5|A|1630, 8UJJ|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJJ_025 not in the Motif Atlas

Homologous match to HL_8CRE_020

Geometric discrepancy: 0.1102

The information below is about HL_8CRE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UJJ|1|L5|G|1627
8UJJ|1|L5|C|1628
8UJJ|1|L5|G|1629
8UJJ|1|L5|A|1630
8UJJ|1|L5|A|1631
8UJJ|1|L5|A|1632
8UJJ|1|L5|G|1633
8UJJ|1|L5|A|1634
8UJJ|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37