Motif HL_87553.1 Version HL_87553.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CSX_002 | 2CSX | 0.9771 | 2 | C | RNA (75-MER) | U | 31 | C | 32 | U | 33 | C | 34 | A | 35 | A | 38 | G | 39 | cWW | |||
| 2 | HL_4WZD_250 | 4WZD | 0.6612 | 0 | 3L | tRNA | U | 47||||P_1 | C | 48||||P_1 | A | 49||||P_1 | U | 50||||P_1 | C | 51||||P_1 | G | 52||||P_1 | A | 53||||P_1 | cWW | ncSW | ||
| 3 | HL_9DFE_024 | 9DFE | 0.5275 | 1 | 1A | LSU rRNA | C | 884 | C | 885 | C | 886 | A | 887 | C | 889 | A | 890 | G | 892 | cWW | ncSW | ntSH | |
| 4 | HL_8P9A_133 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |
| 5 | HL_8CRE_020 | 8CRE | 0.0693 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | |
| 6 | HL_6CF2_001 | 6CF2 | 0.2430 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||
| 7 | HL_5H9F_001 | 5H9F | 0.6155 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 2 |
| UCUCAUAAG | 1 |
| UCAUCGA | 1 |
| CCCACCAG | 1 |
| ACUUCGGU | 1 |
| GCGCCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 2 |
| CUCAUAA | 1 |
| CAUCG | 1 |
| CCACCA | 1 |
| CUUCGG | 1 |
| CGCCAG | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.55 | Max 0.98
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